PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027098120.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

C3H

Protein Properties

Length: 446aa MW: 48280.6 Da PI: 8.72

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027098120.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	33	1e-10	49	72	4	27
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 +C +++rtG C yG++C+++H++ XP_027098120.1 49 LECAYYMRTGVCGYGAKCRYNHPR 72 58********************96 PP
2	zf-CCCH	39.6	8.8e-13	94	118	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C++++rtGtCk+G++CkF+H++ XP_027098120.1 94 EPDCQYYLRTGTCKFGASCKFHHPR 118 789********************96 PP
3	zf-CCCH	38.2	2.4e-12	140	164	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C+++++tG+Ck+G++CkF+H++ XP_027098120.1 140 EKECSYYLKTGQCKFGNTCKFHHPQ 164 689********************97 PP
4	zf-CCCH	35.9	1.2e-11	292	315	4	27
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 +C++++r+G Ck+G++C+F+H+p XP_027098120.1 292 LECQYYMRYGDCKFGPSCRFHHPP 315 58********************97 PP
5	zf-CCCH	26.6	1e-08	340	361	6	27
-SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 6 CrffartGtCkyGdrCkFaHgp 27 C+f+++ G Ck+G +CkF H++ XP_027098120.1 340 CPFYLQKGRCKFGRNCKFDHPM 361 ********************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 446 aa Download sequence
MELYGQSNAR KGLQQNRSRE WAPAAREAES MGRLGLWDGE AYPERPGMLE CAYYMRTGVC 60 GYGAKCRYNH PRDRASVGGS VSLGAADYPE RVGEPDCQYY LRTGTCKFGA SCKFHHPRNA 120 GGSLISVSLN IYGYPLRLGE KECSYYLKTG QCKFGNTCKF HHPQPAGISL PATAHPFYPT 180 VQSPSALSEQ YCCASTNYRV SRPPILTGSY VPGAYGPFLL HTGVVPVPNW GPYTGPITPG 240 FSPGTQASVG ATSLYGVSQL NSSATAFAGT YPTLLSDSNQ KKQKFPERPG QLECQYYMRY 300 GDCKFGPSCR FHHPPNLVVA KAYSALSPLG LPLRPGIQSC PFYLQKGRCK FGRNCKFDHP 360 MGTVEYSPSA SSLTDVPVTP YMLCSSTAME GQAAEFVGSK LDLQITRDRP HGSGLSGSVG 420 LAFSRTAPFL LSSIQISDQG SGPNAD

Sequence ? help Back to Top

Protein Sequence Length: 446 aa Download sequence

MELYGQSNAR KGLQQNRSRE WAPAAREAES MGRLGLWDGE AYPERPGMLE CAYYMRTGVC  60
GYGAKCRYNH PRDRASVGGS VSLGAADYPE RVGEPDCQYY LRTGTCKFGA SCKFHHPRNA  120
GGSLISVSLN IYGYPLRLGE KECSYYLKTG QCKFGNTCKF HHPQPAGISL PATAHPFYPT  180
VQSPSALSEQ YCCASTNYRV SRPPILTGSY VPGAYGPFLL HTGVVPVPNW GPYTGPITPG  240
FSPGTQASVG ATSLYGVSQL NSSATAFAGT YPTLLSDSNQ KKQKFPERPG QLECQYYMRY  300
GDCKFGPSCR FHHPPNLVVA KAYSALSPLG LPLRPGIQSC PFYLQKGRCK FGRNCKFDHP  360
MGTVEYSPSA SSLTDVPVTP YMLCSSTAME GQAAEFVGSK LDLQITRDRP HGSGLSGSVG  420
LAFSRTAPFL LSSIQISDQG SGPNAD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47850.1	1e-167	C3H family protein