PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027098182.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family C3H
Protein Properties Length: 231aa    MW: 25900.1 Da    PI: 6.3995
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027098182.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH48.91e-15147172126
                     --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                     +ktelC+ +++tG+C+yG++C+FaHg
  XP_027098182.1 147 FKTELCNKWQETGECPYGENCQFAHG 172
                     79***********************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    
MINAELTNRL SLLLRATSEY AASVELSGLG LGPGSDMSSV LHGLDKMSLG DGVNEDRRNR  60
GDDVEGAGEN TSQDTMVDTD LAEGSENDEV NRVSLPKSIS VRSDRKLKTV QTGGSSEGQI  120
YKQRVYVPGS EKEKQTVELE VYNQGMFKTE LCNKWQETGE CPYGENCQFA HGIKELRPVL  180
RHPRYKTEVC RMVLSGDHCP YGHRCHFRHT LTDEEKLIRS MNIRPLKPLN R
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68200.22e-62C3H family protein