PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027098305.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

bHLH

Protein Properties

Length: 241aa MW: 27242.7 Da PI: 9.3401

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027098305.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	26.1	1.5e-08	156	203	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++iN+++ L++l+P + k + a +L ++Y++sLq XP_027098305.1 156 SHSLAERMRREKINQKLRCLQDLVPGC----YKSMGMAVMLDVIINYVRSLQ 203 8*************************8....355888889999999998887 PP

Sequence ? help Back to Top
Protein Sequence Length: 241 aa Download sequence
MMNSNMDVVN SLTEIDSFNP NVQELLSLTT HVGFSDHNRQ QSQIPFSFSN DTSHNPNASH 60 HHHLQVPLDF ESAAQFFPQG GVPISHGCND SNSLSEPDYL ANSSSRGSAS AGIPVNKPKG 120 TYNYGEKKRK RSNGKETEKP KEVVHVRAKR GQATDSHSLA ERMRREKINQ KLRCLQDLVP 180 GCYKSMGMAV MLDVIINYVR SLQNQIDQVY FMTSTRWTWM PYLQPKHVLI SQDLLGVKRK 240 D

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	127	132	KKRKRS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G25330.1	5e-44	bHLH family protein