PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027098316.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family bHLH
Protein Properties Length: 175aa    MW: 19298.5 Da    PI: 9.9108
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027098316.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH22.61.9e-071493752
                    HHHHHHHHHHHHHHHHHHCTSCC.C...................................TTS-.STCHHHHHHHHHHHH CS
             HLH  7 erErrRRdriNsafeeLrellPk.as................................kapskK.lsKaeiLekAveYIk 52
                     +Er RR+++++ +++L +ll + as                                k +++   s a+i+ +Av+ I 
  XP_027098316.1 14 VMERHRRQQMKNLYSKLASLLLPpASevnlplpalldyslthvknlkeriqeleakkeKLKGEIgSSTADIVLQAVKIIE 93
                    68*******************99677***************************9999999999999**********9995 PP
Sequence ? help Back to Top
Protein Sequence    Length: 175 aa     Download sequence    
MQAGNLKPRT PRGVMERHRR QQMKNLYSKL ASLLLPPASE VNLPLPALLD YSLTHVKNLK  60
ERIQELEAKK EKLKGEIGSS TADIVLQAVK IIEKGPILEV NLETGLHKRF ILPEVISILE  120
EGGAQVLSAS YATLTDRVLY TISSEASSPR IGIETSRLHD RLKALGGTGC FFSSL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10585.11e-18bHLH family protein