PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027098504.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

C2H2

Protein Properties

Length: 372aa MW: 43587.7 Da PI: 8.7312

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027098504.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	18.4	5.9e-06	64	85	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 +C++Cg sF+ + +L++H+++H XP_027098504.1 64 TCEHCGVSFRKPAYLRQHLQSH 85 6*******************99 PP
2	zf-C2H2	18.4	5.9e-06	91	115	1	23
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 +kCp dC s++rk++L+rH+ H XP_027098504.1 91 FKCPvdDCRSSYRRKDHLTRHLLQH 115 89*******************9887 PP
3	zf-C2H2	11.1	0.0012	120	145	1	23
EEET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt.H 23 ++Cp C+ +F + n+krH + H XP_027098504.1 120 FECPldSCKCRFAYQGNMKRHVKEfH 145 89********************9988 PP
4	zf-C2H2	20	1.9e-06	159	183	1	23
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 y+C+ Cgk+F+ s L+rH +H XP_027098504.1 159 YVCTeiGCGKVFKFASKLQRHEESH 183 99*******************9988 PP
5	zf-C2H2	15	7e-05	250	274	2	23
EET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCp..dCgksFsrksnLkrHirt.H 23 kC+ C sFs+ksnL++H + H XP_027098504.1 250 KCSfeGCLLSFSNKSNLNQHVKAvH 274 688889**************99877 PP

Sequence ? help Back to Top
Protein Sequence Length: 372 aa Download sequence
MVEEKENKRP VIFRDIRRYY CEYCGICRSK KSLISSHILS HHKEELKQKE EENGQAKDEP 60 KMNTCEHCGV SFRKPAYLRQ HLQSHSFERP FKCPVDDCRS SYRRKDHLTR HLLQHQGKLF 120 ECPLDSCKCR FAYQGNMKRH VKEFHYDSSS NDVKGPKQYV CTEIGCGKVF KFASKLQRHE 180 ESHVKLDTVE AFCAEPGCMK YFTNGECLKE HVRSCHQYVI CETCGTRQLK KNFKRHLCSH 240 EVGCSQSKVK CSFEGCLLSF SNKSNLNQHV KAVHLGLQPF PCRFPSCGMK FSFKHVRDNH 300 EKSGRHVFTR GDFEESDEQF RSRPRGGRKR QYPVIETLMR KRIVPPCESD PILNEASDYL 360 SRFFSTESED EL

Sequence ? help Back to Top

Protein Sequence Length: 372 aa Download sequence

MVEEKENKRP VIFRDIRRYY CEYCGICRSK KSLISSHILS HHKEELKQKE EENGQAKDEP  60
KMNTCEHCGV SFRKPAYLRQ HLQSHSFERP FKCPVDDCRS SYRRKDHLTR HLLQHQGKLF  120
ECPLDSCKCR FAYQGNMKRH VKEFHYDSSS NDVKGPKQYV CTEIGCGKVF KFASKLQRHE  180
ESHVKLDTVE AFCAEPGCMK YFTNGECLKE HVRSCHQYVI CETCGTRQLK KNFKRHLCSH  240
EVGCSQSKVK CSFEGCLLSF SNKSNLNQHV KAVHLGLQPF PCRFPSCGMK FSFKHVRDNH  300
EKSGRHVFTR GDFEESDEQF RSRPRGGRKR QYPVIETLMR KRIVPPCESD PILNEASDYL  360
SRFFSTESED EL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72050.1	1e-108	C2H2 family protein