PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027098964.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

HD-ZIP

Protein Properties

Length: 220aa MW: 25126.4 Da PI: 8.4905

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027098964.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	60.8	2.1e-19	74	128	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ ++tk q Lee F+++++++ +++++LA++l+L rqV vWFqNrRa+ k XP_027098964.1 74 RKKLCLTKAQSALLEESFKQHSTLNPKQKQDLARELNLRPRQVEVWFQNRRARTK 128 678899***********************************************98 PP
2	HD-ZIP_I/II	120.5	8.8e-39	74	163	1	91
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 +kk+ l+k q++lLEesF+++++L+p++K++lareL+l+prqv+vWFqnrRARtk+kq+E+d+ +Lk++y++l++en+rLeke +eL+ +l XP_027098964.1 74 RKKLCLTKAQSALLEESFKQHSTLNPKQKQDLARELNLRPRQVEVWFQNRRARTKLKQTEVDCGFLKKCYETLTDENRRLEKELQELK-AL 163 6999***********************************************************************************9.55 PP

Sequence ? help Back to Top
Protein Sequence Length: 220 aa Download sequence
MGKRNPFERW GFEGELKIKQ DHQSADLHRQ DSAASSFSNN SVKRERELGS SEEVEIETVS 60 SRVSDEDDDG SNGRKKLCLT KAQSALLEES FKQHSTLNPK QKQDLARELN LRPRQVEVWF 120 QNRRARTKLK QTEVDCGFLK KCYETLTDEN RRLEKELQEL KALKLAQPLY CMQLPMAILT 180 MCPSCERVGR VGENSSSKSP FSMAPKPHFF NSLTNPSAAC

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	123	131	RRARTKLKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22800.1	3e-64	HD-ZIP family protein