PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027099288.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family ARR-B
Protein Properties Length: 667aa    MW: 74589.5 Da    PI: 5.7472
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027099288.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like621.2e-19250304156
         G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                     +prl+WtpeLHe F++a++ L G+  A P +i + m+++ L+  h++SHLQk+R +
  XP_027099288.1 250 QPRLVWTPELHEIFLNAIAAL-GERDAHPTAIQKEMDIPELSHRHIASHLQKHRKH 304
                     59*******************.9999****************************75 PP
2Myb_DNA-binding36.11.5e-11252302148
                      TSSS-HHHHHHHHHHHHHTTTT..-HHHHHHHHT.TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg..tWktIartmg.kgRtlkqcksrwqkyl 48 
                      r+ WT+e++e++++a++ lG +  ++++I ++m    ++  ++ s++qk++
   XP_027099288.1 252 RLVWTPELHEIFLNAIAALGERdaHPTAIQKEMDiPELSHRHIASHLQKHR 302
                      789********************************99************97 PP
3Response_reg68.62.7e-23201291109
                     EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTT CS
    Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaG 93 
                     +l+vdD+ + + ++ ++l+++ y ev++++ +  al l+++++  +Dl+++ ++mpg dG+++l +i   ++++p+i+++++ + ++a++al+ G
  XP_027099288.1  20 ILLVDDDTDCLANMSSVLREHSY-EVTTTKWAIIALSLIRQRRsfFDLVITEMDMPGFDGFTMLNQILLIKKDIPVILMSSNRDADMAKKALDEG 113
                     89*********************.***************99999***********************9999************************ PP

                     ESEEEESS--HHHHHH CS
    Response_reg  94 akdflsKpfdpeelvk 109
                     a  f++Kp++  +l++
  XP_027099288.1 114 ACFFFFKPVHTPDLIT 129
                     *********9999876 PP
Sequence ? help Back to Top
Protein Sequence    Length: 667 aa     Download sequence    
MDVSSPGGGL IPKAAKGLQI LLVDDDTDCL ANMSSVLREH SYEVTTTKWA IIALSLIRQR  60
RSFFDLVITE MDMPGFDGFT MLNQILLIKK DIPVILMSSN RDADMAKKAL DEGACFFFFK  120
PVHTPDLITV WQHVFRKRGN RKGLLKEVED NGDRTAQTER PSGVNEENVA DQPLIRDPRK  180
GKAPCSDDDG HGSKRPKNVG DDARQANKDK LIIGGNDKQA RDKDVGKRKK MEKRKKRKYR  240
KKSSRSAEKQ PRLVWTPELH EIFLNAIAAL GERDAHPTAI QKEMDIPELS HRHIASHLQK  300
HRKHINKARE VLVRNPPIFE PNVSRYPSLS ERKKPSFFES NMTRYLTPQP TTMRTRKIPS  360
IFDTLMGTNP TEHSQSPYTP SFAPSQFTHP KTYLSEGTAY NQMDALNQLL ANPSNNPPMT  420
SNHQNSYANF GNQESSQLNH VQYSADQGKG KQVLSSFGGY NDNHVAPADD LCKTNVDALI  480
EAIKKELADA LGADANLRQD MKFLARYNNV VPQQSSHQTP SEVFSAACKD LLAPAETDFD  540
IGEQMTYTYK DLAMILNDLN AGSEGISRSS SDQEPPVEFS TACEDLAPAE TDFDIGEQMT  600
YRYEDVAMIL DDSSVGNGNK TGSSSESPDP PLPDNVADDD HDFTERLNIE DFSELFEIFP  660
DIQDGAP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1221230RDKDVGKRKK
2233241KRKKRKYRK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16857.19e-38ARR-B family protein