PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027099678.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family HB-other
Protein Properties Length: 162aa    MW: 18757.2 Da    PI: 8.4952
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027099678.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox491.1e-152878656
                    S--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox  6 tftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                    + +++ + +Lee+F+ n++p+++er+eL ++l+++ +++k+WFqN+R + k
  XP_027099678.1 28 RNSPDLVAQLEEFFKGNPHPNENERKELGRELRVEPKRIKFWFQNKRNQVK 78
                    56778899***************************************8766 PP
Sequence ? help Back to Top
Protein Sequence    Length: 162 aa     Download sequence    
MDPVNGGIGS DDEVSSNNSP KHKNQYHRNS PDLVAQLEEF FKGNPHPNEN ERKELGRELR  60
VEPKRIKFWF QNKRNQVKAQ IARAENHALR EENQKIYLEN MMMRERMRCT VCSTCVGLAT  120
ATKQDDDRKL ILRQLLVENA QLKEEWERLV QFVASLPGGP GT
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00730.22e-33HD-ZIP family protein