PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027099993.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family ARR-B
Protein Properties Length: 649aa    MW: 70453 Da    PI: 6.6088
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027099993.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like88.94.6e-28203256155
         G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                     kpr++W+ eLH++Fv+av++L G++kA+Pk+ilelm+v+gLt+e+v+SHLQk+Rl
  XP_027099993.1 203 KPRVVWSVELHQQFVSAVNHL-GIDKAVPKRILELMNVPGLTRENVASHLQKFRL 256
                     79*******************.********************************8 PP
2Myb_DNA-binding37.84.5e-12205255148
                      TSSS-HHHHHHHHHHHHHTTTT..-HHHHHHHHT.TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg..tWktIartmg.kgRtlkqcksrwqkyl 48 
                      r  W+ e+++++v av+ lG +   +k+I + m+  g+t++++ s++qk++
   XP_027099993.1 205 RVVWSVELHQQFVSAVNHLGIDkaVPKRILELMNvPGLTRENVASHLQKFR 255
                      678**********************************************97 PP
3Response_reg73.67.9e-25211291109
                     EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTT CS
    Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaG 93 
                     vl+vdD+ + +++l+q+l+k  y  v+++++++ al+ll+e++  +D++l D+ mp+mdG++ll+     e++lp+i++++ +  +++ + ++ G
  XP_027099993.1  21 VLVVDDDIICLRILEQMLRKCLY-MVTTCSQATVALNLLRERKgfFDIVLSDVHMPDMDGFKLLELVGL-EMDLPVIMMSGDDRTSLVMRGIRHG 113
                     89*********************.*****************999********************87754.558********************** PP

                     ESEEEESS--HHHHHH CS
    Response_reg  94 akdflsKpfdpeelvk 109
                     a d+l Kp+  eel +
  XP_027099993.1 114 ACDYLIKPIRTEELKN 129
                     *************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 649 aa     Download sequence    
MASACNEAVP VPEQFPVGLK VLVVDDDIIC LRILEQMLRK CLYMVTTCSQ ATVALNLLRE  60
RKGFFDIVLS DVHMPDMDGF KLLELVGLEM DLPVIMMSGD DRTSLVMRGI RHGACDYLIK  120
PIRTEELKNI WQHVVRKRCN VGKEHEHSGG PEDNDWPKNG IDDAEYTSSF NEGAAEKSLK  180
RRKDTKEEDD TEIENDDPTT SKKPRVVWSV ELHQQFVSAV NHLGIDKAVP KRILELMNVP  240
GLTRENVASH LQKFRLYLKR LSGVAQQQAG LPSSFCGALE PNPKVGSLGR FDIQALAASG  300
NIPPQTLAAL HAEFLNRPTG NLVLPGMDQT NLLQASLPVS KCIALDQNVA YGQPLMKCPS  360
NMSKQFSQTV TSADNTHSGP GAWPSKNLVN MGNCDSFAGL TAQNGNVMLS VMQRQQQQHR  420
QQQEQPQKHS TLQEPSRLIN VQPSCLVVPS HSSANFHTGN GLASVNQSCS LSGTSIIDYS  480
ILSPQSNISS LNSGRMGDVE IKPASMLGGL SGAGSISPTL SSGSVNADNG VGIHVQNSAS  540
RFGPARQLSA IVPNMSALQD SYDTSGQMFD HGMLKSTAFV GRGTSIPSRF AVDEAGLPVG  600
NLNQEKMYGE NNANNVKQEP SMNLVENAKV GAPMLRRLSP ADVMSVFSD
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1177183KSLKRRK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16110.11e-117ARR-B family protein