PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027099997.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family MYB_related
Protein Properties Length: 128aa    MW: 14016 Da    PI: 4.6231
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027099997.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding34.35.3e-111153444
                     S-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding  4 WTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                     W+ e d+ + +a + ++ +   +W++Ia+ ++ g++ +++k+++
   XP_027099997.1 11 WSREQDKAFENALATYPEDsadRWEKIAADVP-GKSSEEIKHHY 53
                     ********************************.**********9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 128 aa     Download sequence    
MTADESTSAV WSREQDKAFE NALATYPEDS ADRWEKIAAD VPGKSSEEIK HHYEILVDDV  60
NRIESGCVPL PSYSSCLDGS TSQAGDEGTG KKSGNLGHFS SESNHGGKAS RSDQERRKGI  120
AWTEDEHR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08520.19e-50MYB family protein