PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027100320.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

MIKC_MADS

Protein Properties

Length: 206aa MW: 23562.1 Da PI: 9.1057

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027100320.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	86.8	1.3e-27	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 k+ie+k rqvtfskRr g++KKA+ELSvLCd++vav+ifs +gkly+++s XP_027100320.1 9 KKIEDKNSRQVTFSKRRSGLMKKAKELSVLCDVDVAVLIFSGRGKLYDFCS 59 68***********************************************96 PP
2	K-box	48.9	2.7e-17	100	171	28	99
K-box 28 ienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 + L++ R l d++ L+l eL qLe+qLe++l + Rs+K++ll+e+i l + ek+l+eenk L++k++ XP_027100320.1 100 RKLLEKVERDLEEPDVDHLNLSELVQLEEQLEDALIQTRSRKTRLLMESITSLSEVEKMLREENKLLQNKVA 171 456778888999999******************************************************997 PP

Sequence ? help Back to Top
Protein Sequence Length: 206 aa Download sequence
MGRRKVEIKK IEDKNSRQVT FSKRRSGLMK KAKELSVLCD VDVAVLIFSG RGKLYDFCST 60 NSLAKILQRY RNYAEAEDGS ARISGVEKRN PEGRNVVTIR KLLEKVERDL EEPDVDHLNL 120 SELVQLEEQL EDALIQTRSR KTRLLMESIT SLSEVEKMLR EENKLLQNKV AAGTSNEKRN 180 DLILEFGDLT HVGMISGQRQ AMLELL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G65050.2	3e-39	MIKC_MADS family protein