PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027100823.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

Trihelix

Protein Properties

Length: 365aa MW: 40247.8 Da PI: 5.5365

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027100823.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	68.6	1.2e-21	120	216	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgk..........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfdq 84 +Wt++ v++Li+++ +++e+ ++ kk++W++vsk+++++g+ +sp+qC++k+++lnkrykk++++ +++ +++++++ +++++ XP_027100823.1 120 KWTDSIVRLLIQVVANVGEDGPSEGaegarrksgiIKKGKWRKVSKVLMSKGLCVSPQQCEDKFNDLNKRYKKLNDILGRGtSCRVVENPALLNN 214 7************988888754335556677779*****************************************669********9 PP trihelix 85 le 86 +e XP_027100823.1 215 ME 216 98 PP

Sequence ? help Back to Top
Protein Sequence Length: 365 aa Download sequence
MVKKTIADYH LLVPSPLSLA AKEYLQNPSL SLKNHYSRSR KVAEKDSRIG LREVKDSAPR 60 GFAMTFARER VAEPRNVMSN GAVNINEISS DEDDPSMAEG NGRDTGGGKG KKDAPWVRMK 120 WTDSIVRLLI QVVANVGEDG PSEGAEGARR KSGIIKKGKW RKVSKVLMSK GLCVSPQQCE 180 DKFNDLNKRY KKLNDILGRG TSCRVVENPA LLNNMEHLSD KAKEDVRKLL GSKHLFYKEM 240 CAYHNGQKIT DCNDFELPVH AASVAEQIWE HCDGSPVVGE GTKDKDGSPV AGEGTTDKDG 300 SPVAAQSSKD NDISEGDDAD ENDESDHYMS EDEAADNNAS GSVDRVETSE NREMWEGLWK 360 YQVSI

Sequence ? help Back to Top

Protein Sequence Length: 365 aa Download sequence

MVKKTIADYH LLVPSPLSLA AKEYLQNPSL SLKNHYSRSR KVAEKDSRIG LREVKDSAPR  60
GFAMTFARER VAEPRNVMSN GAVNINEISS DEDDPSMAEG NGRDTGGGKG KKDAPWVRMK  120
WTDSIVRLLI QVVANVGEDG PSEGAEGARR KSGIIKKGKW RKVSKVLMSK GLCVSPQQCE  180
DKFNDLNKRY KKLNDILGRG TSCRVVENPA LLNNMEHLSD KAKEDVRKLL GSKHLFYKEM  240
CAYHNGQKIT DCNDFELPVH AASVAEQIWE HCDGSPVVGE GTKDKDGSPV AGEGTTDKDG  300
SPVAAQSSKD NDISEGDDAD ENDESDHYMS EDEAADNNAS GSVDRVETSE NREMWEGLWK  360
YQVSI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G21200.1	8e-59	Trihelix family protein