PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027100974.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

FAR1

Protein Properties

Length: 530aa MW: 62182.5 Da PI: 6.7096

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027100974.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	62.8	1e-19	79	168	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 fY YA+ +GF +r+s k+ ++g++ r++ C +eg+ree+ k+ +++ r+ +++tr++Cka++++k + ++k+ vt++ eHnH+la XP_027100974.1 79 FYFVYARAMGFGIRRSDRKYY-DDGKTRYRKWLCCREGEREERWKTmENRMREAKVVTRVKCKACFRIKYDLpSSKFIVTEFLREHNHTLA 168 9************998877.78889999999******9996677788999***********99**************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 530 aa Download sequence
MNWHEPSCLE HANEELEREQ LTGSREQNGE RGEMRAEAGE GVMQEEVMAN NVQARCIDDL 60 EYDQVMNMTF DSVEDAELFY FVYARAMGFG IRRSDRKYYD DGKTRYRKWL CCREGEREER 120 WKTMENRMRE AKVVTRVKCK ACFRIKYDLP SSKFIVTEFL REHNHTLATP STAIFLRAHR 180 NVSDADYAHA YALRRVGTRT SQIMKLFALE AGGYDKVNFQ NKDLYNKIER ERKNEIIHGD 240 AEGAIAYLQG KKDLDNDFCY KYHTDSENRL MRLFWADSQS LYDYKCFGEV LVFDSTYKTN 300 DYNQPLVVLC GVNNHFSTCI FACCLVSNED EEAFDWVLQT LVDANGGKKP ISIITDGDPA 360 MKKAIKNIIP EARHRLCSWH LQRNAKYNAN KAFMKRFSSC MHNNWSPQRF EREWEKAVIE 420 CGIQDSEWVK SVYKKRDKWA TAYLRDHFFA GMKSTQRCEK MNDVLKIHLT GELKLFEFMR 480 AFDLGVAAIR HEENRLIAET EQTSLLPTTD MPWIEEHAAE IYTRNIFLIV

Sequence ? help Back to Top

Protein Sequence Length: 530 aa Download sequence

MNWHEPSCLE HANEELEREQ LTGSREQNGE RGEMRAEAGE GVMQEEVMAN NVQARCIDDL  60
EYDQVMNMTF DSVEDAELFY FVYARAMGFG IRRSDRKYYD DGKTRYRKWL CCREGEREER  120
WKTMENRMRE AKVVTRVKCK ACFRIKYDLP SSKFIVTEFL REHNHTLATP STAIFLRAHR  180
NVSDADYAHA YALRRVGTRT SQIMKLFALE AGGYDKVNFQ NKDLYNKIER ERKNEIIHGD  240
AEGAIAYLQG KKDLDNDFCY KYHTDSENRL MRLFWADSQS LYDYKCFGEV LVFDSTYKTN  300
DYNQPLVVLC GVNNHFSTCI FACCLVSNED EEAFDWVLQT LVDANGGKKP ISIITDGDPA  360
MKKAIKNIIP EARHRLCSWH LQRNAKYNAN KAFMKRFSSC MHNNWSPQRF EREWEKAVIE  420
CGIQDSEWVK SVYKKRDKWA TAYLRDHFFA GMKSTQRCEK MNDVLKIHLT GELKLFEFMR  480
AFDLGVAAIR HEENRLIAET EQTSLLPTTD MPWIEEHAAE IYTRNIFLIV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	2e-78	FAR1 family protein