PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027100977.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

FAR1

Protein Properties

Length: 648aa MW: 75021.5 Da PI: 7.6959

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027100977.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	65.3	1.7e-20	86	176	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 +fYn YAk GF +rks+ k+ +g r++vC +eg+r+e+ + ++++r+ ++ trtgC a+++vk + + k++vt++ eHnH+la XP_027100977.1 86 EFYNLYAKLSGFGIRKSNAKRD-ADGISRFRKWVCCCEGYRNEKWFNyEDRKREAKPITRTGCGACFRVKYNIeSVKYVVTRFIMEHNHPLA 176 6**************98887.8998999********9988867889999************99899************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 648 aa Download sequence
MGQDGALKTH DMVQETENGK MGLDVCGRLR SFDLNQEPEC DRDTFIEESG GSIGGHEDEE 60 ADELVGAIGM DDVMKLTFDT EEEAGEFYNL YAKLSGFGIR KSNAKRDADG ISRFRKWVCC 120 CEGYRNEKWF NYEDRKREAK PITRTGCGAC FRVKYNIESV KYVVTRFIME HNHPLASEAS 180 VQHIRSHRKV SDAEYAQAKS LKLVGARICQ IMKHFVIKAG GYSNVGFCIK DLYNRMDEER 240 RKDIFNGDAE GALGFLAAKK DADDMFFYKY HVDNEGRLAW LFWADSKSRA DFSVFGDVLV 300 FDTTYKTNKY HKPLVVLAGV NNHLNSTIFG CALLSDERIE TYEWVLSTFV EAMKGRKPVA 360 VMTDGDSAIR RAIKNLLPDA CHRLCSWHLH RNARSNIRCE EFNNRFYNLM ARKCSTLEFE 420 DRWARLVNEC GVVENEWVKK LYRRRRLWAE AYLRDHFFAG MRSTQRCEKM NAFLNEYLNE 480 KMRLYEFVRS FDLAIAWLRH TESKAVYTSE NIKPVLTTIL PELEGSAAEV FTRNVFFMVR 540 KHLNRQELLI SEGWSEDGGS RTYYYSKYGG HEISWRVDYD RSMEKLICSC MKFESKGIPC 600 AHMFRVMVVE GMNRIPEACI SKRWTKGVYC TNNGMKAFVA DEQLTQMA

Sequence ? help Back to Top

Protein Sequence Length: 648 aa Download sequence

MGQDGALKTH DMVQETENGK MGLDVCGRLR SFDLNQEPEC DRDTFIEESG GSIGGHEDEE  60
ADELVGAIGM DDVMKLTFDT EEEAGEFYNL YAKLSGFGIR KSNAKRDADG ISRFRKWVCC  120
CEGYRNEKWF NYEDRKREAK PITRTGCGAC FRVKYNIESV KYVVTRFIME HNHPLASEAS  180
VQHIRSHRKV SDAEYAQAKS LKLVGARICQ IMKHFVIKAG GYSNVGFCIK DLYNRMDEER  240
RKDIFNGDAE GALGFLAAKK DADDMFFYKY HVDNEGRLAW LFWADSKSRA DFSVFGDVLV  300
FDTTYKTNKY HKPLVVLAGV NNHLNSTIFG CALLSDERIE TYEWVLSTFV EAMKGRKPVA  360
VMTDGDSAIR RAIKNLLPDA CHRLCSWHLH RNARSNIRCE EFNNRFYNLM ARKCSTLEFE  420
DRWARLVNEC GVVENEWVKK LYRRRRLWAE AYLRDHFFAG MRSTQRCEKM NAFLNEYLNE  480
KMRLYEFVRS FDLAIAWLRH TESKAVYTSE NIKPVLTTIL PELEGSAAEV FTRNVFFMVR  540
KHLNRQELLI SEGWSEDGGS RTYYYSKYGG HEISWRVDYD RSMEKLICSC MKFESKGIPC  600
AHMFRVMVVE GMNRIPEACI SKRWTKGVYC TNNGMKAFVA DEQLTQMA

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	442	447	YRRRRL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-100	FAR1 family protein