PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027101117.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family MYB
Protein Properties Length: 310aa    MW: 35087 Da    PI: 5.2449
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027101117.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding45.61.6e-142673148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g W++eEd++l ++    G g+W+ +ar  g+ R++k+c++rw +yl
   XP_027101117.1 26 KGLWSPEEDDKLMNYMLTNGQGCWSDVARNAGLQRCGKSCRLRWINYL 73
                     678*******************************************97 PP
2Myb_DNA-binding53.26.9e-1779122146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+++++E+el+++++++lG++ W+ Ia++++ gRt++++k++w++
   XP_027101117.1  79 RGAFSPQEEELIIHLHALLGNR-WSQIAARLP-GRTDNEIKNFWNS 122
                      89********************.*********.***********97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    
MRKPEPSVEK NNNSNNMSNS SVKLRKGLWS PEEDDKLMNY MLTNGQGCWS DVARNAGLQR  60
CGKSCRLRWI NYLRPDLKRG AFSPQEEELI IHLHALLGNR WSQIAARLPG RTDNEIKNFW  120
NSTIKKRLKN SSSPNTSDSS SIQEQSMMGM FVDLSSSASS SMHSMALTNM VDPLPMLEQS  180
LSTSGGTNAG SYFDPQSCIR QAAYDNPTFS TDNLEGQRSI FFPPLEPGEV ERSAITTANF  240
VDRNPTSNTV DNRSNMINYY GNNNYIKVEN ADGYGSYWEA EELRVKEWDL EELMKDASSF  300
PLPDFQKNNW
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12870.17e-62MYB family protein