PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027101131.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family MYB_related
Protein Properties Length: 308aa    MW: 33460.8 Da    PI: 9.9145
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027101131.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding391.8e-1296141247
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      ++W++eE+  ++ + ++lG+g+Wk I++ +   Rt+ q+ s+ qky
   XP_027101131.1  96 KPWSEEEHRSFLLGLEKLGKGDWKGISKNFVHSRTPTQVASHAQKY 141
                      58*****************************9*************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    
MVKASLRKCS HCGHNGNCSR TCNGKGIKLF GVKINVVEDD YANRQNESIR KSKSMGNLET  60
CNGECNVPDD ADGYVSDGLI HESSGAKTAH ERRKGKPWSE EEHRSFLLGL EKLGKGDWKG  120
ISKNFVHSRT PTQVASHAQK YFLRLMTATE RKKRRTSVFD IPLDEMASTS KLPSASNSHN  180
APISPQATTA AAQVKTCERP PLSPRAASHA VSDLHRPRYM FGVRDYGQGL PACTPPPNAS  240
FLPVWNFSNQ KFAPSPTTAA KYTRGPAVAQ PPSAAFSRFP SYIPPLTGPA NEAAIKDGLD  300
LGVQALTL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61620.15e-57MYB_related family protein