PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027101292.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

HD-ZIP

Protein Properties

Length: 155aa MW: 18388.8 Da PI: 10.7648

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027101292.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	58.6	1e-18	32	83	5	56
SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +f++eq++ Le++F+++ ++ + + +LAk lgL+ rqV++WFqN+Ra++k XP_027101292.1 32 KRFSDEQVKSLESMFNREAKLEPRNKMQLAKDLGLQPRQVSIWFQNKRARWK 83 47*************************************************9 PP
2	HD-ZIP_I/II	118.5	3.7e-38	31	121	3	93
HD-ZIP_I/II 3 krrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 +r+s+eqvk+LE++F++e kLep++K++la++Lglqprqv +WFqn+RAR+k+k+lE++y++Lk+++dal ++ e+L+ke+e+L e+l++ XP_027101292.1 31 AKRFSDEQVKSLESMFNREAKLEPRNKMQLAKDLGLQPRQVSIWFQNKRARWKSKKLEQEYRVLKANFDALCHQFEALKKENESLLEQLHT 121 69************************************************************************************99986 PP

Sequence ? help Back to Top
Protein Sequence Length: 155 aa Download sequence
MEQTGYFEQE RWKPSNAQPF PVPKRKRRNN AKRFSDEQVK SLESMFNREA KLEPRNKMQL 60 AKDLGLQPRQ VSIWFQNKRA RWKSKKLEQE YRVLKANFDA LCHQFEALKK ENESLLEQLH 120 TLNGLLENSN KRQSSSKDSN ENAEHIASTK KRRAS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G46680.1	2e-41	HD-ZIP family protein