PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027101332.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

LBD

Protein Properties

Length: 231aa MW: 25090.4 Da PI: 8.4906

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027101332.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	133.7	7e-42	46	145	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +CaaCk+lrr+Ca++C+++pyf ++p+kfa vh++FGasnv+k+l ++pe++r da++slvyeA++r+rdPvyG++g i++lqqq+++l+ael+ XP_027101332.1 46 PCAACKLLRRRCAQECPFSPYFSPHEPQKFAPVHRVFGASNVSKMLMEVPESQRADAANSLVYEANVRLRDPVYGCMGAISTLQQQVQSLQAELN 140 7********************************************************************************************** PP DUF260 96 llkee 100 ++++e XP_027101332.1 141 AVRAE 145 *9987 PP

Sequence ? help Back to Top
Protein Sequence Length: 231 aa Download sequence
MSRESRERLE EIGKKIKRES DVFSSQLGRR HVLGGDGGGT LNTITPCAAC KLLRRRCAQE 60 CPFSPYFSPH EPQKFAPVHR VFGASNVSKM LMEVPESQRA DAANSLVYEA NVRLRDPVYG 120 CMGAISTLQQ QVQSLQAELN AVRAEILQYR FRETSNINIH VPSNSNLALL SSGAVSIAAL 180 PPTPPPPPPP HLPPPPPSLP HTSPSSSMYS PPSSTAADFS TISNENISFF G

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40470.1	2e-77	LBD family protein