PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027101333.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

LBD

Protein Properties

Length: 230aa MW: 25003.4 Da PI: 8.4906

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027101333.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	133.8	6.9e-42	45	144	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +CaaCk+lrr+Ca++C+++pyf ++p+kfa vh++FGasnv+k+l ++pe++r da++slvyeA++r+rdPvyG++g i++lqqq+++l+ael+ XP_027101333.1 45 PCAACKLLRRRCAQECPFSPYFSPHEPQKFAPVHRVFGASNVSKMLMEVPESQRADAANSLVYEANVRLRDPVYGCMGAISTLQQQVQSLQAELN 139 7********************************************************************************************** PP DUF260 96 llkee 100 ++++e XP_027101333.1 140 AVRAE 144 *9987 PP

Sequence ? help Back to Top
Protein Sequence Length: 230 aa Download sequence
MSRERERLEE IGKKIKRESD VFSSQLGRRH VLGGDGGGTL NTITPCAACK LLRRRCAQEC 60 PFSPYFSPHE PQKFAPVHRV FGASNVSKML MEVPESQRAD AANSLVYEAN VRLRDPVYGC 120 MGAISTLQQQ VQSLQAELNA VRAEILQYRF RETSNINIHV PSNSNLALLS SGAVSIAALP 180 PTPPPPPPPH LPPPPPSLPH TSPSSSMYSP PSSTAADFST ISNENISFFG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40470.1	3e-79	LBD family protein