PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027101379.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family Trihelix
Protein Properties Length: 313aa    MW: 35255.6 Da    PI: 9.3999
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027101379.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix26.31.9e-08381131886
        trihelix  18 eerlrrgklkkplWeevskkm...rergferspkqCkekwenlnkrykkikegekkr....tsessstcpyfdqle 86 
                     + +l rg+l++++W+ev++++      g  ++++q ++k+e+l+kry+ + ++++      + +  s +++f++++
  XP_027101379.1  38 WYSLHRGNLRANHWQEVADNIaprCPIGNAKTAVQYRHKMEKLRKRYRVEIQRAGPYggskSHRYCSAWVHFKRMD 113
                     667899***************77777899*******************9998876432111344456778888887 PP
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    
TLVNTNHRQY HHWWSVAPPS PTITSKSATL PSIITLPWYS LHRGNLRANH WQEVADNIAP  60
RCPIGNAKTA VQYRHKMEKL RKRYRVEIQR AGPYGGSKSH RYCSAWVHFK RMDANSSAAA  120
EANEDEEDQE ESHVKPIGDI YNINNNSSNW SSFHGGMVNG GTGFRIRITG RGNVGPAAAA  180
KVYSRFDDVG GPNPNTGVNY GSTKALRDGF GGRSDIGKRV VGDDVKTGDP LAEMVSAIRV  240
LGDGFVRMER IKMDMIREVE EMRMEMEMEM KRTEMIRESQ QRIGDEDDTF YKISNELLSS  300
TFVSNEGKKF LKL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44730.13e-24Trihelix family protein