PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027101418.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family M-type_MADS
Protein Properties Length: 241aa    MW: 26701.2 Da    PI: 8.7906
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027101418.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF61.59.4e-202068149
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                    k+i+n snrqv fskRr g++KKA+EL+vL +aeva+++ s   +++ +
  XP_027101418.1 20 KKIDNLSNRQVAFSKRRVGLFKKASELCVLIGAEVAIVVHSLGKRVFAF 68
                    68*************************************9987777665 PP
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    
MNNMMMKKKT TQGRKKIDIK KIDNLSNRQV AFSKRRVGLF KKASELCVLI GAEVAIVVHS  60
LGKRVFAFVH PSIDAVINRY TTGSASSSSS SSSSSSSVAD PNTPLGAHEI QQHNRHYAKV  120
SKELEVERKR KELIEGSKLE NGGSFWWDDP IEHMGLEELQ QYKASLEELK KKLLMRADDL  180
MLLKNSSSSS TNLGFNNSGD INPGVTAVGC DDMFFNQTTT EYCNNSIVPY GSDDFGNSLQ  240
V
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.14e-28M-type_MADS family protein