PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027101420.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family M-type_MADS
Protein Properties Length: 244aa    MW: 27062.7 Da    PI: 9.5531
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027101420.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF60.42.2e-192370148
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEE CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklye 48
                    k+i+n snr+v fskRr  ++KKA+EL+vL++aeva+i+ s   +++ 
  XP_027101420.1 23 KKIDNLSNRKVAFSKRRVSLFKKASELCVLTGAEVAIIVHSLGKRVFA 70
                    68*************************************997766665 PP
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    
MAKMNNMMMK KKTTQGRKKI EIKKIDNLSN RKVAFSKRRV SLFKKASELC VLTGAEVAII  60
VHSLGKRVFA FGHPNIDAVI NRYTTGSASS SSSSSSSSSS VADPNTLLGA HEIQQHNRHY  120
AKVSKKLEVE RKRKELIEGS KLENGGSFWW DDPIEHMGLE ELQQYKASLE ELKKKLLMRA  180
DDLMLLINSS SSSTNLGFNN SGDINPGVTA VGCDDMFFNQ TTTEYCNNSI VPYGSDDFGN  240
SLQV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.14e-29M-type_MADS family protein