PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027101428.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family M-type_MADS
Protein Properties Length: 223aa    MW: 24891.2 Da    PI: 9.8349
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027101428.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF67.81e-211663249
                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                    +ie k   qvtfskRr g+ KKA+ELS+LC++e a+i+fs+ gk++ +
  XP_027101428.1 16 KIETKNHLQVTFSKRRSGLYKKAHELSTLCGVELAIIVFSPAGKVFSF 63
                    69999999*************************************988 PP
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    
MAKKPSMGRQ KIKIAKIETK NHLQVTFSKR RSGLYKKAHE LSTLCGVELA IIVFSPAGKV  60
FSFGHPSVDY IIDKFIARCR NPQPNSSALH LVGAHRNASS VRELNLQLTQ ILSELEIEKK  120
RGEAFDLMRK ASQNHYWWES PVNELGLHEL EQLRDSLENM KNSVTSHASK VAAEANYNNS  180
SFFTLNNGAA AGLYHQYESK PTGVSVGSVH PNIFNFGYDN GGF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.12e-53M-type_MADS family protein