PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027101430.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family M-type_MADS
Protein Properties Length: 240aa    MW: 26574 Da    PI: 8.4623
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027101430.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF56.53.6e-182068149
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                    k+i+n snrqv fsk r g++KKA+EL+vL +aeva+++ s   +++ +
  XP_027101430.1 20 KKIDNLSNRQVAFSKQRVGLFKKASELCVLIGAEVAIVVHSLGKRVFAF 68
                    68*************************************9987777665 PP
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    
MNNMMMKKKT TQGRKKIDIK KIDNLSNRQV AFSKQRVGLF KKASELCVLI GAEVAIVVHS  60
LGKRVFAFVH PSIDAVINRY TTGSASSSSS SSSSSSSVAD PNTPLGAHEI QQHNRHYAKV  120
SKELEVERKR KELIEGSKLE NGGSFWWDDP IEHMGLEELQ QYKASLEELK KKLLMRADDL  180
MLLKNSSSSS TNLGFNNSGD INPGVTAVGC DDMFFNQTTT EYCNNSIVPY GSDDFGNSLQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.12e-27M-type_MADS family protein