PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027101534.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family B3
Protein Properties Length: 428aa    MW: 47095.8 Da    PI: 7.8824
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027101534.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3100.31.1e-3146150199
                     EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS.SE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr.se 89 
                     f+kv tpsdv+k++rlv+pk++ae++    ++ +e++  l +ed++g+ W+++++y+++s++yv+tkGW++Fvk+++L++gD+v F++  g+  +
  XP_027101534.1  46 FDKVVTPSDVGKLNRLVIPKQHAEKYfpldSSTNEKGLLLNFEDRNGKPWRFRYSYWNSSQSYVMTKGWSRFVKEKKLDAGDIVSFQRGvGElGK 140
                     89***************************966778999*************************************************66699999 PP

                     E..EEEEE-S CS
              B3  90 felvvkvfrk 99 
                      +l++ ++r+
  XP_027101534.1 141 DRLFIDWRRR 150
                     9999999997 PP
Sequence ? help Back to Top
Protein Sequence    Length: 428 aa     Download sequence    
MAMDSSSSPT TNGSSCSNIV EDADEPRVGG GNTTSAPLII EREHMFDKVV TPSDVGKLNR  60
LVIPKQHAEK YFPLDSSTNE KGLLLNFEDR NGKPWRFRYS YWNSSQSYVM TKGWSRFVKE  120
KKLDAGDIVS FQRGVGELGK DRLFIDWRRR PDAPDHPQLP PSMSTTTFSQ LLPHHQYSFR  180
HPWNHPFYLQ HHQQQQNPRD HYQLLQLNNA ATGVGINSNP HPSHPHHLSN NYAYGNVMTG  240
NPCSGPFIYL RSAAAARPHP VNLGIGTVQM VQKGGGGGGS VGLNPEEVMV EEDGRGRSMV  300
FESVPLVQGK AAAKRLRLFG VNMDCPISES SSEDQEDDNC DILVLPSTAV AHPTMPSQFP  360
HLCSSPPPPP PASSSSSSSS SSSSTCPLQL SHTIMPAVHR STQCPPTTKA VAATARARHL  420
CPWIWIYT
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46870.12e-71B3 family protein