PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027101580.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family AP2
Protein Properties Length: 136aa    MW: 15399.2 Da    PI: 10.3475
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027101580.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP249.51.1e-1556115155
             AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     s y+GV++++++gr++A+++d  ++n    k+ ++++lg ++ +e Aa+ ++ a++k++g
  XP_027101580.1  56 SIYRGVTRHRWTGRFEAHLWDkTTWNAiqtKKgRQIYLGAYDNEEAAARTYDLAALKYWG 115
                     57*******************666699988557*************************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 136 aa     Download sequence    
MKRPHSSCSP SSSCIELKKS RTTKHASSSS RAKRDKKKSQ ISADASSSPI AARRSSIYRG  60
VTRHRWTGRF EAHLWDKTTW NAIQTKKGRQ IYLGAYDNEE AAARTYDLAA LKYWGPGTIL  120
NFPLENYSEE LEEMGN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54320.33e-42AP2 family protein