PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027101798.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family B3
Protein Properties Length: 173aa    MW: 18975.6 Da    PI: 9.7483
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027101798.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B360.62.6e-1961149387
                     EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE...EEETTE.....EEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
              B3   3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkl.iyrkksgr.....yvltkGWkeFvkangLkegDfvvFkldgr 87 
                      ++++ ++l+++ l++p kf+++  ++  +++ +tl++ sg +W+vkl  yr +s++     +v++kGW +F  +n+Lk gD+++F+ld++
  XP_027101798.1  61 RITINRSNLRRNVLTIPSKFVKSKYLN--QKTSVTLRNASGGEWQVKLaAYRTGSKAayytkVVMAKGWGDFHMSNQLKIGDVCLFELDRS 149
                     5678999**************999777..4457***************444555555777778899*********************9874 PP
Sequence ? help Back to Top
Protein Sequence    Length: 173 aa     Download sequence    
MVFKTYVFDP SACEKDYSSA GSENLTTNKV PCAQPLTLPN VAGIKEEEAE GAVGPYNPHF  60
RITINRSNLR RNVLTIPSKF VKSKYLNQKT SVTLRNASGG EWQVKLAAYR TGSKAAYYTK  120
VVMAKGWGDF HMSNQLKIGD VCLFELDRST ALGSPSNAVM NVQVMSNNIP STS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24700.18e-14B3 family protein