PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027101973.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family B3
Protein Properties Length: 181aa    MW: 20252.6 Da    PI: 4.4445
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027101973.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B337.15.5e-1268153595
                     -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-.TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
              B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvlt.kGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                      + s+v+k++ +v+p +  ++  +k+       + + +g+sWe+++   ++s++  ++ + Wk+F+++ngLk+gD +  +l+++s+++  +k
  XP_027101973.1  68 VSFSHVNKLCHMVFPSRLRSDLPSKT----VPAVVTCRGKSWEMTF--LGGSQKLRFEvQSWKRFASDNGLKVGDAIFWELMESSDEKVSFK 153
                     5669999********99876664332....33566789********..999999555449********************996655544333 PP
Sequence ? help Back to Top
Protein Sequence    Length: 181 aa     Download sequence    
MSEEGKMESN EKVDSSAHTA DGEVIDVNVQ DSEAKDIELH HDNDGLDQSL VDDELSPLSE  60
EPFYHHVVSF SHVNKLCHMV FPSRLRSDLP SKTVPAVVTC RGKSWEMTFL GGSQKLRFEV  120
QSWKRFASDN GLKVGDAIFW ELMESSDEKV SFKVQIIRGD FPSELQAQVN GETAATPILI  180
E
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58280.12e-06B3 family protein