PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027101989.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

C3H

Protein Properties

Length: 232aa MW: 26075.4 Da PI: 8.2246

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027101989.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	32.4	1.6e-10	6	29	4	27
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 ++C++++r+G C yG rC F+H++ XP_027101989.1 6 KECPYYMRNGSCGYGTRCVFHHPE 29 58********************96 PP
2	zf-CCCH	29	1.9e-09	155	181	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C +f++tG Ck+ + C+F+H++ XP_027101989.1 155 PGQPECAYFMKTGDCKFKSACRFHHPK 181 5789*********************96 PP
3	zf-CCCH	28	3.6e-09	197	222	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +++ +Cr++ r+G+Ck+G C F H+ XP_027101989.1 197 PGRNICRHYERFGICKFGRVCLFDHP 222 57899********************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 232 aa Download sequence
MRLGGKECPY YMRNGSCGYG TRCVFHHPEP SSMGGLDLQK SSLNGKPIRH SAHSLGSPSI 60 DSAPLHLSEA SQPNQVPWST RPLSSTLSYR NDYSSHTIAN SVPQWMHGHS EFNECQAEEV 120 PQQRSRNTYL VSGAARADML EQDIPVQVEE FPERPGQPEC AYFMKTGDCK FKSACRFHHP 180 KGQPTCILSE KGLPLRPGRN ICRHYERFGI CKFGRVCLFD HPVHPNLSTF KD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G48440.1	3e-49	C3H family protein