PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027101992.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

C3H

Protein Properties

Length: 207aa MW: 23499.5 Da PI: 8.217

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027101992.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	32.6	1.4e-10	6	29	4	27
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 ++C++++r+G C yG rC F+H++ XP_027101992.1 6 KECPYYMRNGSCGYGTRCVFHHPE 29 58********************96 PP
2	zf-CCCH	29.2	1.6e-09	130	156	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C +f++tG Ck+ + C+F+H++ XP_027101992.1 130 PGQPECAYFMKTGDCKFKSACRFHHPK 156 5789*********************96 PP
3	zf-CCCH	28.3	3.1e-09	172	197	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +++ +Cr++ r+G+Ck+G C F H+ XP_027101992.1 172 PGRNICRHYERFGICKFGRVCLFDHP 197 57899********************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 207 aa Download sequence
MRLGGKECPY YMRNGSCGYG TRCVFHHPEP SSMGGLDLQK SSLNASQPNQ VPWSTRPLSS 60 TLSYRNDYSS HTIANSVPQW MHGHSEFNEC QAEEVPQQRS RNTYLVSGAA RADMLEQDIP 120 VQVEEFPERP GQPECAYFMK TGDCKFKSAC RFHHPKGQPT CILSEKGLPL RPGRNICRHY 180 ERFGICKFGR VCLFDHPVHP NLSTFKD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G48440.1	9e-51	C3H family protein