PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027102172.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family M-type_MADS
Protein Properties Length: 181aa    MW: 19803.1 Da    PI: 5.4623
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027102172.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF53.14e-171964146
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEE CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkl 46
                    k+ienks  q tfskRr+ ++ KA ELS  C+++vavi+ s+ g++
  XP_027102172.1 19 KKIENKSYLQATFSKRRTSLFRKAAELSATCGVDVAVIVQSPGGNV 64
                    68****************************************9987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 181 aa     Download sequence    
MEATVKRKGG SGRKKIEIKK IENKSYLQAT FSKRRTSLFR KAAELSATCG VDVAVIVQSP  60
GGNVFAAGGR SSVTTIVDRY LAATSSTPNN ADQFPQADGG GQERDQDEEQ YAQILKEIEA  120
EKIKEKSLME SQGGEGFWWE RGFDDLDVNE LEEHIAAMET LRKNVSAKAE EKAKANNIAA  180
S
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.14e-18M-type_MADS family protein