PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027102186.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

MYB

Protein Properties

Length: 291aa MW: 32627.7 Da PI: 6.419

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027102186.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	47.3	4.8e-15	15	62	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W+++Ed++l+ ++ ++G g+W+++a g+ R +k+c++rw +yl XP_027102186.1 15 KGLWSPDEDLKLKSYILKHGHGCWSSVAVNAGLQRNGKSCRLRWINYL 62 678*******************************************97 PP
2	Myb_DNA-binding	48.7	1.7e-15	68	113	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg ++ eE+e ++ ++ +lG++ W+ a++m+ gRt++++k++w++yl XP_027102186.1 68 RGMFSVEEEETILTLHGMLGNK-WAQMAQHMP-GRTDNEIKNYWHSYL 113 7889****************.*****.**********997 PP

Sequence ? help Back to Top
Protein Sequence Length: 291 aa Download sequence
MGCKHADKPK QKHKKGLWSP DEDLKLKSYI LKHGHGCWSS VAVNAGLQRN GKSCRLRWIN 60 YLRPGLKRGM FSVEEEETIL TLHGMLGNKW AQMAQHMPGR TDNEIKNYWH SYLKKKVAKI 120 GETEAQAKAE KSSSASCLES SPSSMKSNPP TSTIESTEQL ESSLMSDAEQ SVSQCQMDLP 180 REACRSNLPR VLFAEWLSLD QFRDQNCESS GNPVVATNNL VYYNSDFQDS FMHDLLLNEG 240 TFGGGNHQGL SNGAVDDILP PALKFEDQIL ENSFVDFING RFSLTSDDLY L

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G25560.1	2e-56	MYB family protein