PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027102478.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

LBD

Protein Properties

Length: 249aa MW: 26933 Da PI: 5.2864

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027102478.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	126.8	1e-39	48	149	1	101
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 +C aCk+lrrkC ++C++ap+f ++q +++fa+vhk+FGasnv+kll ++pe++r+da+ ++ yeA+ar++dPvyG+v++il+lqqq+++l+ael XP_027102478.1 48 PCGACKFLRRKCISGCIFAPHFGSDQgAARFAAVHKVFGASNVSKLLLHIPENRRNDAVVTISYEAQARLSDPVYGCVSTILALQQQVASLQAEL 142 7*********************9989*************************************************************** PP DUF260 95 allkeel 101 a+++++l XP_027102478.1 143 AVVQTQL 149 99885 PP

Sequence ? help Back to Top
Protein Sequence Length: 249 aa Download sequence
MNDQSKSDQG MSDSGRRKGS SEKRASSIIE ATEGALLNVG VSPPPSAPCG ACKFLRRKCI 60 SGCIFAPHFG SDQGAARFAA VHKVFGASNV SKLLLHIPEN RRNDAVVTIS YEAQARLSDP 120 VYGCVSTILA LQQQVASLQA ELAVVQTQLM NSRLAMANAL RDSQVIQQQQ IVALQPAYSN 180 TSAASNTLMN INSFNSNFDL AGEAAPSNSF DPVHLSQAPQ EVEEEDEEES QNHLDFTSQI 240 FHQDNKTFF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G03760.1	1e-62	LBD family protein