PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027102681.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family LBD
Protein Properties Length: 307aa    MW: 34029.9 Da    PI: 7.6401
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027102681.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26085.95.5e-2741128187
          DUF260   1 aCaaCkvlrrkCakd.CvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqql 87 
                     aC+aCk++r+kC+k+ C++ ++fpae++  f +vhk+FG+snv+k++k l+++e+e+a++sl +eA  + +d v+G +g++++l++q 
  XP_027102681.1  41 ACSACKHQRKKCKKEeCPMLKHFPAEKADIFSAVHKVFGVSNVSKIIKVLEPHEQERAVESLEWEALGWKKDKVHGPLGMYKSLEEQN 128
                     7***********9877********************************************************************9985 PP
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    
MLGMLDDDDS NSNNNNTTSN EDENNKNNDK DNNVEVGNRP ACSACKHQRK KCKKEECPML  60
KHFPAEKADI FSAVHKVFGV SNVSKIIKVL EPHEQERAVE SLEWEALGWK KDKVHGPLGM  120
YKSLEEQNLL IIEKNQKLFE QNQKLQEENR SLKEGLRSMQ QSPTENCSNN AGVLALHPGA  180
GNVMNYYHGS GGLSLEPGIT NAAPVSAARF LQDQRGREVL PVAAAAYYDV NHAQAVLANM  240
GSHHAGQSSR AGYSLANGLY SRYSTSHPSI DRRSSNQVMP LFGYPSSQQL QFINSGQRNT  300
PGNLKFF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G06280.17e-23LBD family protein