PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027102727.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family C2H2
Protein Properties Length: 180aa    MW: 20219.3 Da    PI: 10.166
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027102727.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2193.7e-066486123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    ++C++C+k F r  nL+ H r H
  XP_027102727.1 64 FVCEICNKGFQRDQNLQLHRRGH 86
                    89*******************88 PP
Sequence ? help Back to Top
Protein Sequence    Length: 180 aa     Download sequence    
MNNSSAMATV PSASEEASVS SAGNPMIAAQ VGPVKKKRNL PGMPDPDAEV IALSPKTLLA  60
TNRFVCEICN KGFQRDQNLQ LHRRGHNLPW KLRQRNGKEV KKRVYVCPEA TCIHHDPSRA  120
LGDLTGIKKH FCRKHGEKKW KCERCSKKYA VISDWKAHTK TCGTREYRCD CGTLFSRSCH
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50700.13e-99C2H2 family protein