PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027102841.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

HD-ZIP

Protein Properties

Length: 401aa MW: 43534.7 Da PI: 7.205

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027102841.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	55.2	1.2e-17	200	254	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ +++keq Lee F+++++++ +++ LAk+l+L rqV vWFqNrRa+ k XP_027102841.1 200 RKKLRLSKEQSAYLEESFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTK 254 778899***********************************************98 PP
2	HD-ZIP_I/II	127.5	5.5e-41	200	290	1	92
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 +kk+rlskeq++ LEesF+e+++L+p++K +la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l++en+rL+ke +eLr +lk XP_027102841.1 200 RKKLRLSKEQSAYLEESFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTDENRRLHKELQELR-ALK 290 69*************************************************************************************9.555 PP

Sequence ? help Back to Top
Protein Sequence Length: 401 aa Download sequence
MELGLSLGGE NPSKPFGFTA KANGSSEKQN HPNNTNNKDS SSSAKLGLGF CMALGINNNS 60 NETRESRRNS ESKDNDGMDA DADDVDEDDD RTSSEHTRDD DDRRIFWSSG SSGNVGLPVV 120 GRGFDVNRVP AVGGVAEEVS SPNSVASSFQ MDFSIFRGGG NLGNGGNKRD FGAAGGNDVV 180 EAERTSSRAS DEDENGLNTR KKLRLSKEQS AYLEESFKEH NTLNPKQKLA LAKQLNLRPR 240 QVEVWFQNRR ARTKLKQTEV DCEYLKRCCE TLTDENRRLH KELQELRALK TSNPFYMQLP 300 ATTLTMCPSC ERVATTSTAP STTTTTAAAA APVPSTTTTT PATNVKSTTT ATTTTSDNAP 360 KAIPFPISRP RFYPFAAAAA AAAHTNHPHH HHHHHHQSAA S

Sequence ? help Back to Top

Protein Sequence Length: 401 aa Download sequence

MELGLSLGGE NPSKPFGFTA KANGSSEKQN HPNNTNNKDS SSSAKLGLGF CMALGINNNS  60
NETRESRRNS ESKDNDGMDA DADDVDEDDD RTSSEHTRDD DDRRIFWSSG SSGNVGLPVV  120
GRGFDVNRVP AVGGVAEEVS SPNSVASSFQ MDFSIFRGGG NLGNGGNKRD FGAAGGNDVV  180
EAERTSSRAS DEDENGLNTR KKLRLSKEQS AYLEESFKEH NTLNPKQKLA LAKQLNLRPR  240
QVEVWFQNRR ARTKLKQTEV DCEYLKRCCE TLTDENRRLH KELQELRALK TSNPFYMQLP  300
ATTLTMCPSC ERVATTSTAP STTTTTAAAA APVPSTTTTT PATNVKSTTT ATTTTSDNAP  360
KAIPFPISRP RFYPFAAAAA AAAHTNHPHH HHHHHHQSAA S

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	199	205	TRKKLRL
2	249	257	RRARTKLKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06710.1	1e-68	HD-ZIP family protein