PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027103024.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family C3H
Protein Properties Length: 141aa    MW: 16409.1 Da    PI: 8.4158
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027103024.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH36.29.8e-124261726
                    SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH  7 rffartGtCkyGdrCkFaHg 26
                    + +++tG+C+yG++C+FaHg
  XP_027103024.1 42 NKWQETGECPYGENCQFAHG 61
                    67*****************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 141 aa     Download sequence    
MSGVLAQHHP AQRVYVPGRE KEKQTVELEV CNQRMFKTEL RNKWQETGEC PYGENCQFAH  60
GIKELRPVLR HPRYKTELYS SYSYGDYAGP NTYYTTSQLS EPAFYNYYKH GYERSSQDYA  120
HFINYSTVQF GHSPTSGSRA G
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66810.15e-27C3H family protein