PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027103035.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family FAR1
Protein Properties Length: 219aa    MW: 25185.8 Da    PI: 9.4996
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027103035.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR177.33.1e-2469156190
            FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                     +fY +YAkevGF +++s+ +k   ng+ ++r f+Cs egkr ++k++  + r +r+etr +C ak+kv+ +++gk+++ +l  eHnH l+
  XP_027103035.1  69 NFYLAYAKEVGFGIKRSSFYKD-SNGKLMDRVFCCSAEGKRGKDKRD-LNVRAPRPETRFNCSAKMKVNSRQTGKFRICQLIIEHNHYLS 156
                     6*****************9998.8888*****************999.999************************************997 PP
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    
MDAKASMETE VSSCRRLDFD KVDQITNDEV STPPVLNVIK DINKIHTLIS FELIPKMGME  60
FESEEDAYNF YLAYAKEVGF GIKRSSFYKD SNGKLMDRVF CCSAEGKRGK DKRDLNVRAP  120
RPETRFNCSA KMKVNSRQTG KFRICQLIIE HNHYLSSSNK SHLHRSHRKI NSIHAAEIDM  180
AYRVGIAPKV SHELMALQVG GWENLGFIPK DYRNYLRSK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.13e-26FAR1 family protein