PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027103038.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

FAR1

Protein Properties

Length: 361aa MW: 41740.3 Da PI: 6.6038

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027103038.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	51.4	3.5e-16	26	113	1	89
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHel 89 kfYn+YA ++ Fsv+k++ +k ++ +t+r++ C k+g +++ + + + +rtra t++g k+++ + + + k++v++l+leHn el XP_027103038.1 26 KFYNKYALKMSFSVSKNYLNKD-KDSVTTSRRYSCCKKGVKRKYEGD-VMPKRTRAPTKIGYGVKMVIVLFRgTMKYRVHDLVLEHNYEL 113 6***************9998.6777***********99999.9999*************9999************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 361 aa Download sequence
MDCSKLVEDE TPELGMEFNS DEDAYKFYNK YALKMSFSVS KNYLNKDKDS VTTSRRYSCC 60 KKGVKRKYEG DVMPKRTRAP TKIGYGVKMV IVLFRGTMKY RVHDLVLEHN YELHIAQCSH 120 MMPSQRKVSE TQRFQIEISE DAGFSLKQSH ELMGKEAGGM GNVGYTRDDL KRYLRTRREM 180 SLKYGEVGSM LNYFQEQTLE NPSFFHVVQL DCEEQTTNIL WADTGMLIDY NFFGDVITFD 240 TIYKTNKEYR PLGVFVGFNQ YKQIVIFAKT YSSIVFGAFQ NEYGESTNIV ILRQQDAGMF 300 VEFAVMRYDG GPERIVEHAA ISTHCDIDAY HVFSPSPQER NNTQGLRLTV DVASLQRQID 360 E

Sequence ? help Back to Top

Protein Sequence Length: 361 aa Download sequence

MDCSKLVEDE TPELGMEFNS DEDAYKFYNK YALKMSFSVS KNYLNKDKDS VTTSRRYSCC  60
KKGVKRKYEG DVMPKRTRAP TKIGYGVKMV IVLFRGTMKY RVHDLVLEHN YELHIAQCSH  120
MMPSQRKVSE TQRFQIEISE DAGFSLKQSH ELMGKEAGGM GNVGYTRDDL KRYLRTRREM  180
SLKYGEVGSM LNYFQEQTLE NPSFFHVVQL DCEEQTTNIL WADTGMLIDY NFFGDVITFD  240
TIYKTNKEYR PLGVFVGFNQ YKQIVIFAKT YSSIVFGAFQ NEYGESTNIV ILRQQDAGMF  300
VEFAVMRYDG GPERIVEHAA ISTHCDIDAY HVFSPSPQER NNTQGLRLTV DVASLQRQID  360
E

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	2e-41	FAR1 family protein