PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027103039.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family FAR1
Protein Properties Length: 137aa    MW: 15516.8 Da    PI: 8.8116
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027103039.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR129.32.9e-0922793289
            FAR1 32 tfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHel 89
                    +  Csk+g +++ + + +  +rtr+ t+tg   k+++ + + + k++v++l+leHnHel
  XP_027103039.1 22 EDACSKKGVKRKYEGD-VMPKRTRVPTKTGYGVKMVIVLFRgTMKYRVHDLVLEHNHEL 79
                    557********99999.999******************9999****************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 137 aa     Download sequence    
MDCSKLVEDG TPELGMEFNS EEDACSKKGV KRKYEGDVMP KRTRVPTKTG YGVKMVIVLF  60
RGTMKYRVHD LVLEHNHELY IAQCSHMMPS QRKVSKTQRF QTEISEVAGL SLKQSHELMG  120
KETGGMGNVG YTRDDVK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-08FAR1 family protein