PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027103046.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family GATA
Protein Properties Length: 138aa    MW: 14864.2 Da    PI: 11.1131
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027103046.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA48.11.6e-152559135
            GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                    Cs C+tt TplWR gp g+k+L naCG++y kk++
  XP_027103046.1 25 CSDCHTTRTPLWRGGPAGPKSLYNACGIKYNKKRR 59
                    ********************************985 PP
Sequence ? help Back to Top
Protein Sequence    Length: 138 aa     Download sequence    
MRLENAKRSS SSSPSASSSK QLKSCSDCHT TRTPLWRGGP AGPKSLYNAC GIKYNKKRRE  60
LLGLDRGRND KGKKKRKSSS GGNKSNEGGG VGQSLRMKLM ALGGEMVLRR SGKLMGKLRE  120
EEQAAILLMA LSCGSVYA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15677KKRRELLGLDRGRNDKGKKKRK
25778KKRRELLGLDRGRNDKGKKKRK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06740.12e-23GATA family protein