PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027103096.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family MYB_related
Protein Properties Length: 251aa    MW: 27709 Da    PI: 9.9799
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027103096.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding377.9e-1296141247
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      ++W++eE+  ++ + ++lG+g+Wk I++ +   Rt+ q+ s+ q y
   XP_027103096.1  96 KPWSEEEHRSFLLGLEKLGKGDWKGISKNFVHSRTPTQVASHAQXY 141
                      58*****************************9***********988 PP
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    
MVKASLRKCS HCGHNGNCSR TCNGKGIKLF GVKINVVEDD YANRQNESIR KSKSMGNLET  60
CNGECNVPDD ADGYVSDGLI HESSGAKTAH ERRKGKPWSE EEHRSFLLGL EKLGKGDWKG  120
ISKNFVHSRT PTQVASHAQX YFLRLMTATE RKKRRTSVFD IPLDEMASTS KLPSASNSHN  180
APISPQFGVR DHGQGLPACT PPPNVSFLPI WNFSNQKFAP SPTTAAKYTR GPAVAQPPAL  240
HFRGFHHIFH P
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61620.17e-56MYB_related family protein