PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027103151.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family B3
Protein Properties Length: 252aa    MW: 29035.8 Da    PI: 9.471
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027103151.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B343.46e-1410100197
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEE..TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltled..esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                     f k+  p+d+ +s  l lp +f++  +++   + ++ l++   + r W v++   k  +  ++++GW++F  +n L+ gD +vF+++g +ef   
  XP_027103151.1  10 FMKAYFPPDSKQS--LKLPSSFTSFLKSS--LPDKVFLKNhyDDKRIWAVEV--AKIENDLFFQAGWSQFLAENCLEFGDLLVFQYNGGQEF--D 96 
                     6677777777665..9******9666654..77899999954555*******..********************************987777..6 PP

                     EEEE CS
              B3  94 vkvf 97 
                     +k++
  XP_027103151.1  97 FKIL 100
                     6665 PP
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    
MKAVRQYPAF MKAYFPPDSK QSLKLPSSFT SFLKSSLPDK VFLKNHYDDK RIWAVEVAKI  60
ENDLFFQAGW SQFLAENCLE FGDLLVFQYN GGQEFDFKIL GKTADKREVI YAFDFSSEEQ  120
QEEEYPQEME SENKSRRGAV GLKTKSNSDS GRQEEFEEVS SKKKQKRDFR GSAARKRSLQ  180
RREISENKAG RSIKACGKGV HFIDNTADAE FKSRDDRPIT PCFVAKVDEK RSNLVHVPKD  240
LSRPVVFILN KL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60142.15e-14B3 family protein