PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027103167.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family GATA
Protein Properties Length: 196aa    MW: 21299.8 Da    PI: 10.9506
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027103167.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA47.23e-1583117135
            GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                     Cs C+tt TplWR gp g+k+L naCG++y kk++
  XP_027103167.1  83 CSDCHTTRTPLWRGGPAGPKSLYNACGIKYNKKRR 117
                     ********************************985 PP
Sequence ? help Back to Top
Protein Sequence    Length: 196 aa     Download sequence    
MIWRWTIENF AVASLGAMLF AKVITSLIIP SLWNTTSNVV IKAAHDIIST YLQNICAMDA  60
KNAKRSSSSS SPSASSSKQL KSCSDCHTTR TPLWRGGPAG PKSLYNACGI KYNKKRRELL  120
RLDRGRNDKG KKKRKSSSGG NKSNEGGGVG QSLRMKLMAL GGEMVLRRSG KLMGKLREEE  180
QAAILLMALS CGSVYA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1114135KKRRELLRLDRGRNDKGKKKRK
2115136KKRRELLRLDRGRNDKGKKKRK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06740.12e-23GATA family protein