PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027103290.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family NF-YB
Protein Properties Length: 203aa    MW: 22860.7 Da    PI: 5.9565
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027103290.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB159.55.2e-5046141297
           NF-YB   2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelege 96 
                      eqdr+lPianv+r+m+++lP  akisk+aket+qec++efisfvt+easdkc +e+rkt+ngdd++wal+tlGf+ y+e++  yl+kyre+e++
  XP_027103290.1  46 DEQDRLLPIANVGRVMRQILPPSAKISKEAKETIQECATEFISFVTAEASDKCYKENRKTVNGDDICWALSTLGFDTYAEAMLRYLHKYREFERQ 140
                     69*******************************************************************************************98 PP

           NF-YB  97 k 97 
                     +
  XP_027103290.1 141 R 141
                     6 PP
Sequence ? help Back to Top
Protein Sequence    Length: 203 aa     Download sequence    
MTCAHSLHTY ASVQKYIYLY VLMIDEGATC QHSEAKVIHL TSEMVDEQDR LLPIANVGRV  60
MRQILPPSAK ISKEAKETIQ ECATEFISFV TAEASDKCYK ENRKTVNGDD ICWALSTLGF  120
DTYAEAMLRY LHKYREFERQ RVNQSKASNL ENEAHTPIRA STDSTDSDGS NLQPEKQSES  180
PIAFEFRVLE KGQSSKIKPA ATG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09030.13e-59NF-YB family protein