PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027103753.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

C2H2

Protein Properties

Length: 680aa MW: 74875.6 Da PI: 6.6959

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027103753.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.6	9.4e-05	72	93	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 kC++C + F ++ n++rHir+H XP_027103753.1 72 KCEKCAQEFCSPVNYRRHIRVH 93 7*******************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 680 aa Download sequence
MPVAKLSTGG TLDSMKSGDG NDSLDTVSRQ TVGKEPHISL SRTGDIPVPW FQLLHELPGW 60 PLLKPLKVQM EKCEKCAQEF CSPVNYRRHI RVHRRSLNFD KESHKIRDML AAFWDKLSLE 120 DAKEVVSLRD VTLKEVTGTS VIKSLAASLH KPGVWTLPQV YVEAGSTLLD VIHAKSSRLP 180 ISSQELFSIL DDASERTFLR AGTAESVLKY IFGGKPGRIA FELKNLVACT SFLFELKLVK 240 AWVADKDVEA LRCQKLLVEE EEAAQKRQAE LLERKKQKKL RQKEQKAREH SNGDGVALID 300 ATSSEGSFLA EMCSSSPPDS SPDAPCTVDD GTTFLKPVQL SSTEQNNDIE AQSDLSSGHL 360 DSGLVQNVEP TMVSVNGRRW RQVSKSHWAG RSDFHGNQNH QVSKLEPVQK LVPAKDRGTV 420 VSSSKVWTKK LKVDNDEEIL RPTLEEAVNQ SDENKCELII GSISIPVTNC ILRKNKISLG 480 EAHYSCSTEE GKHKSNVLEE PANSDSRQFG LNEAATELRM PKSLHGSRGP SPVQRANHDA 540 QDGVMVDKLE DRTASDGSCL QSSSSDDDHS QSREGLTCVY EGMAMPQGLQ LSTAAAKAFL 600 AQRWKEAISA EHVMTLVLSE ESDLPGLPEN QIDISALDFE NGQVDLGRIS STGGITKAKN 660 RTNPEKGVKI KYIPKQKVAS

Sequence ? help Back to Top

Protein Sequence Length: 680 aa Download sequence

MPVAKLSTGG TLDSMKSGDG NDSLDTVSRQ TVGKEPHISL SRTGDIPVPW FQLLHELPGW  60
PLLKPLKVQM EKCEKCAQEF CSPVNYRRHI RVHRRSLNFD KESHKIRDML AAFWDKLSLE  120
DAKEVVSLRD VTLKEVTGTS VIKSLAASLH KPGVWTLPQV YVEAGSTLLD VIHAKSSRLP  180
ISSQELFSIL DDASERTFLR AGTAESVLKY IFGGKPGRIA FELKNLVACT SFLFELKLVK  240
AWVADKDVEA LRCQKLLVEE EEAAQKRQAE LLERKKQKKL RQKEQKAREH SNGDGVALID  300
ATSSEGSFLA EMCSSSPPDS SPDAPCTVDD GTTFLKPVQL SSTEQNNDIE AQSDLSSGHL  360
DSGLVQNVEP TMVSVNGRRW RQVSKSHWAG RSDFHGNQNH QVSKLEPVQK LVPAKDRGTV  420
VSSSKVWTKK LKVDNDEEIL RPTLEEAVNQ SDENKCELII GSISIPVTNC ILRKNKISLG  480
EAHYSCSTEE GKHKSNVLEE PANSDSRQFG LNEAATELRM PKSLHGSRGP SPVQRANHDA  540
QDGVMVDKLE DRTASDGSCL QSSSSDDDHS QSREGLTCVY EGMAMPQGLQ LSTAAAKAFL  600
AQRWKEAISA EHVMTLVLSE ESDLPGLPEN QIDISALDFE NGQVDLGRIS STGGITKAKN  660
RTNPEKGVKI KYIPKQKVAS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	273	280	ERKKQKKL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G25610.1	1e-114	C2H2 family protein