PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027103809.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family MYB
Protein Properties Length: 323aa    MW: 36540.1 Da    PI: 6.7078
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027103809.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.72.3e-173077148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W++eEd+ lvd++++ G gtW++ ++  g+ R++k+c++rw +yl
   XP_027103809.1 30 KGAWSPEEDKTLVDYINKNGHGTWRSLPKLAGLLRCGKSCRLRWTNYL 77
                     79******************************99************97 PP
2Myb_DNA-binding48.52e-1583128148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++ +eE+  + +++++lG++ W++Ia++++ gRt++++k++w+++l
   XP_027103809.1  83 RGPFCPEEEASIMQLHTMLGNK-WAAIASHLP-GRTDNEIKNFWNSHL 128
                      79999*****************.*********.************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    
MRNMEKKKKR ETKQKKMGRS PCCDKEAVKK GAWSPEEDKT LVDYINKNGH GTWRSLPKLA  60
GLLRCGKSCR LRWTNYLRPG IKRGPFCPEE EASIMQLHTM LGNKWAAIAS HLPGRTDNEI  120
KNFWNSHLKK RAKASLDQPE SILTSDDFGL ETPSTRHMVQ WESARLEAEA RLSMDPLLLS  180
SSSAAKTECD YFLRLWNSEV GESFRQGVAC QSPLSQVSSS IKDESTSGVT TQTDSARIFG  240
SADATENQKQ EEHMSCHNSE ELLTGSDSSK SHELDNSSET KMRLLQDLPN GNDMEFLQEP  300
IDDVSMYLQE PISLTDCYPW KQL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61250.11e-97MYB family protein