PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027104027.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family ERF
Protein Properties Length: 271aa    MW: 29178.5 Da    PI: 7.1144
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027104027.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.62.1e-20119169255
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     +++GVr+++ +g+++AeIrdps+ng  +r++lg++ taeeAa a+++a+ +++g
  XP_027104027.1 119 HFRGVRQRP-WGKFAAEIRDPSKNG--ARVWLGTYETAEEAALAYDRAAYRMRG 169
                     69*******.***********9998..*************************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    
MYHPISAELP PANSSGEFPA YRGSCSFSSL VPCLTETWGD LPLKVDDPED MVIYWILRDA  60
VNVGWSPFNL TASSDVSVDV RVKAEPSDAT EPATTSPAAD HCSAPPPAAA GAAQPKGRHF  120
RGVRQRPWGK FAAEIRDPSK NGARVWLGTY ETAEEAALAY DRAAYRMRGS KALLNFPHRV  180
GLNEPEPVRV TAKRRSPEQA ASSSSSVSSA SESGSPSPSP KRRRKVVAAE LSAEPEPEVE  240
SQSNAYRVNC QKTHVPVGEQ LLSSTVLSPH T
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1220226PKRRRKV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17500.13e-47ERF family protein