PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027104205.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

LBD

Protein Properties

Length: 228aa MW: 24339.8 Da PI: 8.1229

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027104205.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	107.3	1.2e-33	41	142	1	97
DUF260 1 aCaaCkvlrrkCakd.CvlapyfpaeqpkkfanvhklFGasnvlkllkal....peeeredamsslvyeAearardPvyGavgvilklqqqleql 90 +CaaCk +rr+C+++ C+++pyfp ++p +fa vh++FGasnv+k+l+ + pe+ r +++ slvyeA+ar+rdPvyG+++ i++lq+q+e+l XP_027104205.1 41 PCAACKQMRRRCSAKkCPFSPYFPPSEPLRFASVHRVFGASNVSKMLAVWygevPESLRAEVAISLVYEADARLRDPVYGCTAEISALQRQVESL 135 7*********8655***************************97666658889*********************************** PP DUF260 91 kaelall 97 ++ l+++ XP_027104205.1 136 QQLLNSA 142 *988765 PP

Sequence ? help Back to Top
Protein Sequence Length: 228 aa Download sequence
MSAIREKVEK VKIEPDYGHK GLNQIGGGGG GGGEGGRVIR PCAACKQMRR RCSAKKCPFS 60 PYFPPSEPLR FASVHRVFGA SNVSKMLAVW YGEVPESLRA EVAISLVYEA DARLRDPVYG 120 CTAEISALQR QVESLQQLLN SAWDELLKYK NPHHEADIFN AEPPPSHGVA LLPSVATTAA 180 FPPPPSPTVL LVPPPPPTSS GSLLLSSSAS SNQYCPLSAA ADFSTISN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G30340.1	3e-42	LBD family protein