PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027104654.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family MYB
Protein Properties Length: 255aa    MW: 28870.4 Da    PI: 8.8747
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027104654.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.99.7e-181461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd++lv  v+ +G ++W++ ++  g+ R++k+c++rw +yl
   XP_027104654.1 14 KGPWTPEEDQILVSFVQHYGHENWRALPKQAGLLRCGKSCRLRWTNYL 61
                     79******************************99************97 PP
2Myb_DNA-binding57.72.7e-1867112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++++eE+e ++++++ +G++ W++Ia++++ gRt++++k++w+++l
   XP_027104654.1  67 RGNFSKEEEETIIKLHQIMGNR-WSAIANRLP-GRTDNEIKNYWNTHL 112
                      89********************.*********.************996 PP
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    
MVRVPCCEKM GLKKGPWTPE EDQILVSFVQ HYGHENWRAL PKQAGLLRCG KSCRLRWTNY  60
LRPDIKRGNF SKEEEETIIK LHQIMGNRWS AIANRLPGRT DNEIKNYWNT HLKKRVHQDA  120
VGQKDLRQLQ TNLWRSNSQG TPESGEASNH PGSEGNGDVQ NFTGSIHENF SSLDYSISAP  180
GPARVLAETN LKQSAKDSSK TNKYLGPASD SRLQFLSTGE SNIEPGEDSI KEDMVFWYNL  240
LLIAGKSQEK FAQIV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23250.13e-73MYB family protein